refactor: consolidate codebase — remove archived code, deduplicate packages, standardize middleware

- Delete 17 server-archived/ directories (consolidated into apps/api/)
- Delete apps-archived/ (clock, wisekeep) and services-archived/ (it-landing, ollama-metrics-proxy)
- Fix type safety: replace all `any` casts in cross-app-queries.ts with proper Local* types
- Remove duplicate shared-auth-stores package (identical copy of shared-auth-ui/stores/)
- Remove duplicate theme store from shared-stores (canonical version in shared-theme)
- Migrate memoro-server rate-limiter to shared-hono/rateLimitMiddleware
- Migrate uload-server JWT auth + error handler to shared-hono (authMiddleware, errorHandler)
- Migrate arcade-server error handling to shared-hono
- Merge shared-profile-ui and shared-app-onboarding into shared-ui
- Unify /clock route into /times/clock, remove redirect stubs

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

apps/storage/apps/server-archived/package.json

@@ -1,18 +0,0 @@
-{
-	"name": "@storage/server",
-	"version": "0.1.0",
-	"private": true,
-	"type": "module",
-	"scripts": {
-		"dev": "bun run --watch src/index.ts",
-		"start": "bun run src/index.ts"
-	},
-	"dependencies": {
-		"@manacore/shared-hono": "workspace:*",
-		"@manacore/shared-storage": "workspace:*",
-		"hono": "^4.7.0"
-	},
-	"devDependencies": {
-		"typescript": "^5.9.3"
-	}
-}

apps/storage/apps/server-archived/src/index.ts

@@ -1,117 +0,0 @@
-/**
- * Storage Hono Server — File upload/download via S3
- *
- * Metadata CRUD for files/folders handled by mana-sync.
- * This server handles S3 operations (upload, download, presigned URLs).
- */
-
-import { Hono } from 'hono';
-import { cors } from 'hono/cors';
-import { authMiddleware, healthRoute, errorHandler, notFoundHandler } from '@manacore/shared-hono';
-
-const PORT = parseInt(process.env.PORT || '3016', 10);
-const CORS_ORIGINS = (process.env.CORS_ORIGINS || 'http://localhost:5185').split(',');
-
-const app = new Hono();
-
-app.onError(errorHandler);
-app.notFound(notFoundHandler);
-app.use('*', cors({ origin: CORS_ORIGINS, credentials: true }));
-app.route('/health', healthRoute('storage-server'));
-app.use('/api/*', authMiddleware());
-
-// ─── File Upload (server-only: S3) ──────────────────────────
-
-app.post('/api/v1/files/upload', async (c) => {
-	const userId = c.get('userId');
-	const formData = await c.req.formData();
-	const file = formData.get('file') as File | null;
-	const folderId = formData.get('folderId') as string | null;
-
-	if (!file) return c.json({ error: 'No file' }, 400);
-	if (file.size > 100 * 1024 * 1024) return c.json({ error: 'Max 100MB' }, 400);
-
-	try {
-		const { createStorageStorage, generateUserFileKey, getContentType } = await import(
-			'@manacore/shared-storage'
-		);
-		const storage = createStorageStorage();
-		const key = generateUserFileKey(userId, file.name);
-		const buffer = Buffer.from(await file.arrayBuffer());
-
-		await storage.upload(key, buffer, {
-			contentType: getContentType(file.name),
-			public: false,
-		});
-
-		return c.json(
-			{
-				id: crypto.randomUUID(),
-				name: file.name,
-				storagePath: key,
-				storageKey: key,
-				mimeType: file.type,
-				size: file.size,
-				parentFolderId: folderId,
-			},
-			201
-		);
-	} catch (_err) {
-		return c.json({ error: 'Upload failed' }, 500);
-	}
-});
-
-// ─── File Download (server-only: S3 presigned URL) ──────────
-
-app.get('/api/v1/files/:id/download', async (c) => {
-	const storagePath = c.req.query('storagePath');
-	const urlOnly = c.req.query('url') === 'true';
-
-	if (!storagePath) return c.json({ error: 'storagePath required' }, 400);
-
-	try {
-		const { createStorageStorage } = await import('@manacore/shared-storage');
-		const storage = createStorageStorage();
-
-		if (urlOnly) {
-			const url = await storage.getDownloadUrl(storagePath, { expiresIn: 3600 });
-			return c.json({ url });
-		}
-
-		const data = await storage.download(storagePath);
-		return new Response(data.body, {
-			headers: {
-				'Content-Type': data.contentType || 'application/octet-stream',
-				'Content-Disposition': `attachment; filename="${storagePath.split('/').pop()}"`,
-			},
-		});
-	} catch (_err) {
-		return c.json({ error: 'Download failed' }, 500);
-	}
-});
-
-// ─── Version Upload ─────────────────────────────────────────
-
-app.post('/api/v1/files/:id/versions', async (c) => {
-	const userId = c.get('userId');
-	const fileId = c.req.param('id');
-	const formData = await c.req.formData();
-	const file = formData.get('file') as File | null;
-
-	if (!file) return c.json({ error: 'No file' }, 400);
-
-	try {
-		const { createStorageStorage, generateUserFileKey } = await import('@manacore/shared-storage');
-		const storage = createStorageStorage();
-		const key = generateUserFileKey(userId, `v-${Date.now()}-${file.name}`);
-		const buffer = Buffer.from(await file.arrayBuffer());
-
-		await storage.upload(key, buffer, { contentType: file.type });
-
-		return c.json({ fileId, storagePath: key, size: file.size }, 201);
-	} catch (_err) {
-		return c.json({ error: 'Version upload failed' }, 500);
-	}
-});
-
-export default { port: PORT, fetch: app.fetch };

apps/storage/apps/server-archived/tsconfig.json

@@ -1,11 +0,0 @@
-{
-	"compilerOptions": {
-		"target": "ESNext",
-		"module": "ESNext",
-		"moduleResolution": "bundler",
-		"strict": true,
-		"esModuleInterop": true,
-		"skipLibCheck": true
-	},
-	"include": ["src/**/*.ts"]
-}